VILLARS SYMPOSIUM 2016
NON-‐coding RNAs : Function and Evolution
12-‐14 September 2016 Eurotel Victoria, Villars-‐sur-‐Ollon
Scientific Committee : MARQUES Ana, Prof., University of Lausanne POIRIER Yves, Prof., University of Lausanne SCHWANDER Tanja, Prof., University of Lausanne
Funding and Supporting Organization
CUSO Doctoral Program in Ecology and Evolution CUSO Doctoral Program in Microbial Sciences CUSO Doctoral Program in Molecular Plant Sciences CUSO Doctoral Program StarOmics Administrative Assistant ZOIA Debora, CUSO MPS Coordinator, University of Lausanne
[email protected]
Venue : Eurotel Victoria Route des Layeux , CH 1884 Villars-‐sur-‐Ollon villars@eurotel-‐victoria.ch Tel. +41 24 495 31 31
Check-in from 14h-15h
WIFI Access N° utilisateur : 7748031249 Password : 2010 You find this booklet on PDF version on the main page of the Department of Plant Molecular Biology of the University of Lausanne : www.unil.ch/dbmv
VILLARS SYMPOSIUM 2016 Non-coding RNAs : from function to evolution 12-‐14 September 2016 – Eurotel Victoria, Villars-‐sur-‐Ollon Main Conference Room -‐ Workrooms
Monday September 12, 2016 13:45-‐14:00 Welcome 14:00-‐15:00
Ana Eulalio, MicroRNAs as novel players in bacterial pathogen-‐host interaction Chair : Hyunjin Shim, EPFL
15:00-‐16:00
David Baulcombe, Paramutation and mobile silencing RNA in plants
16:00-‐16:30
Coffee break
16:30-‐18:30
Journal Club sessions 1-‐2
19:00
Dinner
20:30-‐21:30
Student’s quick talks
Chair : Manuel Hofmann, University of Geneva
Tuesday September 13, 2016 8:00-‐9:00 Brian Gregory, Global analysis of RNA-‐protein interactions and RNA secondary structure in plants Chair : Carolina Elejalde, University of Lausanne 9:00-‐10:00
Chung-‐I Wu, Tigers eat rabbits -‐ How microRNAs stabilize gene regulatory networks Chair : Yi-‐Fang Hsieh, University of Lausanne
10:00-‐10:30
Coffee break
10:30-‐11:30
Lingling Chen, Circular RNAs
11:30-‐12:30
Torben Jensen, Sorting RNA for function or decay Chair : Franziska Gruhl, University of Lausanne
12:30
Lunch
13:30-‐17:00
Free time for hiking and other activities
17:00-‐19:00
Journal Club sessions 3-‐6
19:00
Dinner
Chair : Bibek Aryal, University of Fribourg
Wednesday September 14, 2016 8:00-‐9:00 Caroline Dean, Sensing and remembering winter Chair : Jared Fudge, University of Geneva 9:00-‐10:00
John Rinn, Three and four dimensional dynamics of lncRNA localization Chair : Zheng Yan, University of Lausanne
10:00-‐10:30
Coffee break
10:30-‐12:30
Journal Club sessions 7-‐10
12 :30
Lunch
14:00-‐15:00
Ramesh Pillai, Genome defense by germline small RNAs
15:00-‐16:00
Igor Ulitsky, Evolution and modes of action of long noncoding RNAs Chair : Simone Mumbauer , University of Lausanne
End of meeting
Chair : Adriano Biasini, University of Lausanne
VILLARS SYMPOSIUM 2016 Non-coding RNAs : from function to evolution 12-‐14 September 2016 – Eurotel Victoria, Villars-‐sur-‐Ollon JOURNAL CLUBS PAPER REFERENCE & TITLE
EULALIO Ana -‐ SESSION 1, Monday 12, SALON DIABLERETS I, 16:30-‐18:30 AE_Paper7_CellHostMicrobe2016
PRESENTED BY MUMBAUER Simone
THE HOST SHAPES THE GUT MICROBIOTA VIA FECAL MICRORNA
University of Lausanne
AE_Paper8_NatCommun2014
AGUILAR BULTET Lisandra
FUNCTIONAL HIGH-‐THROUGHPUT SCREENING IDENTIFIES THE MIR-‐15 MICRORNA FAMILY AS A CELLULAR RESTRICTION FACTORS FOR SALMONELLA INFECTION
University of Bern
AE_Paper9_Nature2016
SHIM Hyunjin
DUAL RNA-‐SEQ UNVEILS NONCODING RNA FUNCTION IN HOST-‐PATHOGEN INTERACTIONS
BAULCOMBE David – SESSION 2, Monday 12, SALON DIABLERETS II, 16:30-‐18:30 DB_Paper28_GenomeRes2016
EPFL
BOURGINE Baptiste
MOST MICRORNAS IN THE SINGLE-‐CELL ALGA CHLAMYDOMONAS REINHARDTII ARE PRODUCED BY DICER-‐LIKE 3-‐MEDIATED CLEAVAGE OF INTRONS AND UNTRANSLATED REGIONS OF CODING RNAS
University of Lausanne
DB_Paper29_ProcNatlAcadSciUSA2016
HOFMANN Manuel
MOBILE SMALL RNAS REGULATE GENOME-‐WIDE DNA METHYLATION
University of Geneva
DB_Paper30_JExpBot2016
STEENSMA Priscille
SLTAB2 IS THE PARAMUTATED SULFUREA LOCUS IN TOMATO
GREGORY Brian – SESSION 3, Tuesday 13, SALON DIABLERETS I, 17:00-‐19:00 BG_Paper10_Science2016
University of Geneva
ELEJALDE Carolina
SYNTHETIC EVOLUTIONARY ORIGIN OF A PROOFREADING REVERSE TRANSCRIPTASE
University of Lausanne
BG_Paper11_MolCell2015
PESQUERA Marta
GLOBAL ANALYSIS OF THE RNA-‐PROTEIN INTERACTION AND RNA SECONDARY STRUCTURE LANDSCAPES OF THE ARABIDOPSIS NUCLEUS
University of Geneva
BG_Paper12_Cell2015 WIDESPREAD CO-‐TRANSLATIONAL RNA DECAY REVEALS RIBOSOME DYNAMICS WU Chung-‐I – SESSION 4, Tuesday 13, SALON DIABLERETS II, 17:00-‐19:00
GARSCHALL Kathrin University of Lausanne
CW_Paper4_PlosBiol2011
MANGE François
COUPLED EVOLUTION OF TRANSCRIPTION AND MRNA DEGRADATION
University of Lausanne
CW_Paper5_Nature2011
ARONGAUS Adriana
GLOBAL QUANTIFICATION OF MAMMALIAN GENE EXPRESSION CONTROL
University of Geneva
CW_Paper6_GenomeRes2009 EVOLUTION UNDER CANALIZATION AND THE DUAL ROLES OF MICRORNAS-‐A HYPOTHESIS CHEN Lingling – SESSION 5, Tuesday 13, WORKROOM N°17, 17:00-‐19:00
BIASINI Adriano University of Lausanne
LC_Paper19_Nature2013
MORADI Aboubakr
CIRCULAR RNAS ARE A LARGE CLASS OF ANIMAL RNAS WITH REGULATORY POTENCY
University of Fribourg
LC_Paper20_MolCell2013
ARYAL Bibek
CIRCULAR INTRONIC LONG NONCODING RNAS
University of Fribourg
LC_Paper21_Cell2014 COMPLEMENTARY SEQUENCE-‐MEDIATED EXON CIRCULARIZATION JENSEN Torben – SESSION 6, Tuesday 13, WORKROOM N°18, 17:00-‐19:00
GRUHL Franziska University of Lausanne
TJ_Paper25_NatStructMolBiol2013
VACHEY Gabriel
THE HUMAN CAP-‐BINDING COMPLEX IS FUNCTIONALLY CONNECTED TO THE NUCLEAR RNA EXOSOME
University of Lausanne
TJ_Paper26_MolCell2011
DANZA Francesco
INTERACTING PROFILING IDENTIFIES THE HUMAN NUCLEAR EXOSOME TARGETING COMPLEX
University of Geneva
TJ_Paper27_CellRep2015
HSIEH Yi-‐Fang
THE NUCLEAR POLYA-‐BINDING PROTEIN NAB2P IS ESSENTIAL FOR MRNA PRODUCTION
University of Lausanne
DEAN Caroline – SESSION 7, Wednesday 14, SALON DIABLERETS I, 10:30-‐12:30 CD_Paper1_ELife2015
SKVORTSOVA Mariya
LOCAL CHROMATINE ENVIRONNEMENT OF A POLYCOMB TARGET GENE INSTRUCTS ITS OWN EPIGENETIC INHERITANCE
University of Geneva
CD_Paper2_GenesDev2015
SELA Ayala
PHENOTYPIC EVOLUTION THROUGH VARIATION SPLICING OF THE NONCODING RNA COOLAIR
University of Geneva
CD_Paper3_Science2013 R-‐LOOP STABILIZATION REPRESSES ANTISENSE TRANSCRIPTION AT THE ARABIDOPSIS FLC LOCUS RINN John – SESSION 8, Wednesday 14, SALON DIABLERETS II, 10:30-‐12:30
FUDGE Jared University of Geneva
JR_Paper16_NatStructMolBiol2014
JIALIN Liu
TOPOLOGICAL ORGANIZATION OF MULTICHROMOSOMAL REGIONS BY THE LONG INTERGENIC NONCODING RNA FIRRE
University of Lausanne
JR_Paper17_NatCommun2016
YAN Zheng
FUNCTION AND EVOLUTION OF LOCAL REPEATS IN THE FIRRE LOCUS
University of Lausanne
JR_Paper18_NatMethods2015
YARAHMADOV Tural
MULTIPLEXABLE, LOCUS-‐SPECIFIC TARGETING OF LONG RNAS WITH CRISPR-‐DISPLAY PILLAI Ramesh – SESSION 9, Wednesday 14, WORKROOM N°17, 10:30-‐12:30
University of Bern
RP_Paper22_Science2007
KRAFT Matthias
DEVELOPMENTALLY REGULATED PIRNA CLUSTERS IMPLICATE MILI IN TRANSPOSON CONTROL
University of Bern
RP_Paper23_Cell2007 DISCRETE SMALL RNA-‐GENERATING LOCI AS MASTER REGULATORS OF TRANSPOSON ACTIVITY IN DROSOPHILA ULITSKY Igor – SESSION 9, Wednesday 14, WORKROOM N°18, 10:30-‐12:30
IU_Paper13_MolCell2009 AN ARCHITECTURAL ROLE FOR A NULEAR NONCODING RNA : NEAT1 RNA IS ESSENTIAL FOR THE STRUCTURE OF PARASPECKLES
IU_Paper15_CellStemCell2015 OPPOSING ROLES FOR THE INCRNA HAUNT AND ITS GENOMIC LOCUS IN REGULATING HOXA GENE ACTIVATION DURING EMBRYONIC STEM CELL DIFFERENTIATION
SIQUEIRA REIS Rodrigo University of Lausanne
KHAN Ghazanfar University of Lausanne
FERREIRA DA SILVA Maria University of Lausanne
VILLARS SYMPOSIUM 2016
Non-coding RNAs : from function to evolution 12-‐14 September 2016 – Eurotel Victoria, Villars-‐sur-‐Ollon QUICK TALKS SESSION 20:30-‐21:30, Monday 12, Conference Room
TITLE
PRESENTED BY
COSTA NEVES FERREIRA DA SILVA Maria
Linc-MoP is a modulator of embryonic stem cell state
CUSO StarOmics PhD Student University of Lausanne
YAN Zheng
An alternative class of targets for microRNAs containing CG dinucleotide
CUSO Ecology & Evolution PhD Student University of Lausanne
KRESOJA Jelena
Mechanism regulating the expression of mesothelioma biomarker calretinin
PhD Student University of Zurich
VACHEY Gabriel
Genome editing for Huntington's disease
CUSO StarOmics PhD Student University of Lausanne
VILLARS SYMPOSIUM 2016 Non-coding RNAs : from function to evolution 12-‐14 September 2016 – Eurotel Victoria, Villars-‐sur-‐Ollon ATTENDANCE LIST CUSO Participants 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
NAME & SURNAME AGUILAR BULTET Lisandra ARONGAUS Adriana Beatriz ARYAL Bibek BIASINI Adriano BOURGINE Baptiste COSTA NEVES FERR. DA SILVA Maria DANZA Francesco ELEJALDE Carolina FUDGE Jared GARSCHALL Kathrin GRUHL Franziska HOFMANN Manue HSIEH Yi-‐Fang KRAFT Matthias LIU Jialin MANGE François MORADI Aboubakr MUMBAUER Simone PESQUERA ALONSO Marta SELA Ayala SHIM Hyunjin SKVORTSOVA Mariya STEENSMA Priscille VACHEY Gabriel YAN Zheng YARAHMADOV Tural
External Participants
NAME & SURNAME BEZLER Alexandra, Dr. CIAUDO Constance, Prof. DEFORGES Jules, Dr. FLOREZ RUEDA Ana Marcela, Dr. KHAN Ghazanfar, Dr. KRESOJA Jeleda, PhD student SIQUEIRA REIS Rodrigo, Dr. STUDER Tania, PhD student THAPAR Roopa, Prof.
UNIVERSITY UNIBE UNIGE UNIFR UNIL UNIL UNIL UNIGE UNIL UNIGE UNIL UNIL UNIGE UNIL UNIBE UNIL UNIL UNIFR UNIL UNIGE UNIGE EPFL UNIGE UNIGE UNIL UNIL UNIBE
EMAIL ADDRESS
[email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] Yi-‐
[email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected]
Institution University of Lausanne ETHZ University of Lausanne University of Zurich University of Lausanne University of Zurich University of Lausanne Heideleberg University Texas University
EMAIL ADDRESS
[email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected]‐heideleberg.de
[email protected]
36 37 38 39
NAME & SURNAME MARQUES Ana, Prof. POIRIER Yves, Prof. SCHWANDER Tanja, Prof. ZOIA Debora, CUSO Coordinator
Organizers
Invited Speakers
NAME & SURNAME 40 BAULCOMBE David 41 CHEN Lingling 42 DEAN Caroline 43 EULALIO Ana 44 GREGORY Brian 45 46 47 48
JENSEN Torben PILLAI Ramesh RINN John ULITSY Igor
49 WU Chung-‐I
Institution University of Lausanne University of Lausanne University of Lausanne University of Lausanne
EMAIL ADDRESS
[email protected] [email protected] [email protected] [email protected]
Institution University of Cambridge Shanghai Institute for Biological Sciences John innes Centre University of Würzburg University of Pennsylvania Aarhus University University of Geneva University of Harvard Weizmann Institute of Science University of Chicago
EMAIL ADDRESS
[email protected] [email protected] [email protected] ana.eulalio@uni-‐wuerzburg.de
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