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VILLARS  SYMPOSIUM  2016  

NON-­‐coding  RNAs  :  Function  and  Evolution    

12-­‐14  September  2016   Eurotel  Victoria,  Villars-­‐sur-­‐Ollon  

      Scientific  Committee  :     MARQUES  Ana,  Prof.,  University  of  Lausanne   POIRIER  Yves,  Prof.,  University  of  Lausanne   SCHWANDER  Tanja,  Prof.,  University  of  Lausanne  

  Funding  and  Supporting  Organization  

       

  CUSO  Doctoral  Program  in  Ecology  and  Evolution   CUSO  Doctoral  Program  in  Microbial  Sciences   CUSO  Doctoral  Program  in  Molecular  Plant  Sciences   CUSO  Doctoral  Program  StarOmics     Administrative  Assistant   ZOIA  Debora,  CUSO  MPS  Coordinator,  University  of  Lausanne   [email protected]  

      Venue  :   Eurotel  Victoria   Route  des  Layeux  ,  CH  1884  Villars-­‐sur-­‐Ollon   villars@eurotel-­‐victoria.ch     Tel.  +41  24  495  31  31  

           

Check-­in  from  14h-­15h  

        WIFI  Access       N°  utilisateur  :  7748031249   Password  :  2010           You  find  this  booklet  on  PDF  version  on  the  main  page  of  the  Department  of  Plant  Molecular  Biology  of  the  University   of  Lausanne  :  www.unil.ch/dbmv  

 

VILLARS  SYMPOSIUM  2016   Non-­coding  RNAs  :  from  function  to  evolution   12-­‐14  September  2016  –  Eurotel  Victoria,  Villars-­‐sur-­‐Ollon     Main  Conference  Room  -­‐  Workrooms    

    Monday  September  12,  2016     13:45-­‐14:00   Welcome   14:00-­‐15:00      

Ana   Eulalio,   MicroRNAs   as   novel   players   in   bacterial   pathogen-­‐host   interaction   Chair  :  Hyunjin  Shim,  EPFL  

15:00-­‐16:00  

David  Baulcombe,  Paramutation  and  mobile  silencing  RNA  in  plants  

16:00-­‐16:30    

Coffee  break  

16:30-­‐18:30  

Journal  Club  sessions  1-­‐2    

19:00      

Dinner  

20:30-­‐21:30  

Student’s  quick  talks  

Chair  :  Manuel  Hofmann,  University  of  Geneva  

 

    Tuesday  September  13,  2016     8:00-­‐9:00   Brian  Gregory,  Global  analysis  of  RNA-­‐protein  interactions  and  RNA  secondary  structure   in  plants   Chair  :  Carolina  Elejalde,  University  of  Lausanne   9:00-­‐10:00  

Chung-­‐I  Wu,  Tigers  eat  rabbits  -­‐  How  microRNAs  stabilize  gene  regulatory  networks   Chair  :  Yi-­‐Fang  Hsieh,  University  of  Lausanne  

10:00-­‐10:30  

Coffee  break  

10:30-­‐11:30  

Lingling  Chen,  Circular  RNAs  

11:30-­‐12:30  

Torben  Jensen,  Sorting  RNA  for  function  or  decay   Chair  :  Franziska  Gruhl,  University  of  Lausanne  

12:30    

Lunch  

13:30-­‐17:00  

Free  time  for  hiking  and  other  activities  

17:00-­‐19:00  

Journal  Club  sessions  3-­‐6  

19:00    

Dinner  

Chair  :  Bibek  Aryal,  University  of  Fribourg  

    Wednesday  September  14,  2016     8:00-­‐9:00   Caroline  Dean,  Sensing  and  remembering  winter       Chair  :  Jared  Fudge,  University  of  Geneva   9:00-­‐10:00        

John   Rinn,   Three   and   four   dimensional   dynamics   of   lncRNA   localization   Chair  :  Zheng  Yan,  University  of  Lausanne  

10:00-­‐10:30  

Coffee  break  

10:30-­‐12:30  

Journal  Club  sessions  7-­‐10  

12  :30    

Lunch  

14:00-­‐15:00      

Ramesh  Pillai,  Genome  defense  by  germline  small  RNAs    

15:00-­‐16:00      

Igor   Ulitsky,   Evolution   and   modes   of   action   of   long   noncoding   RNAs   Chair  :  Simone  Mumbauer  ,  University  of  Lausanne    

End  of  meeting  

Chair  :  Adriano  Biasini,  University  of  Lausanne  

VILLARS  SYMPOSIUM  2016   Non-­coding  RNAs  :  from  function  to  evolution   12-­‐14  September  2016  –  Eurotel  Victoria,  Villars-­‐sur-­‐Ollon     JOURNAL  CLUBS         PAPER  REFERENCE  &  TITLE    

 

 

 

 

 

EULALIO  Ana    -­‐  SESSION  1,  Monday  12,  SALON  DIABLERETS  I,  16:30-­‐18:30   AE_Paper7_CellHostMicrobe2016  

PRESENTED  BY     MUMBAUER  Simone  

THE  HOST  SHAPES  THE  GUT  MICROBIOTA  VIA  FECAL  MICRORNA  

University  of  Lausanne  

AE_Paper8_NatCommun2014  

AGUILAR  BULTET  Lisandra  

FUNCTIONAL  HIGH-­‐THROUGHPUT  SCREENING  IDENTIFIES  THE  MIR-­‐15  MICRORNA   FAMILY  AS  A  CELLULAR  RESTRICTION  FACTORS  FOR  SALMONELLA  INFECTION      

University  of  Bern  

AE_Paper9_Nature2016  

SHIM  Hyunjin  

DUAL  RNA-­‐SEQ  UNVEILS  NONCODING  RNA  FUNCTION  IN  HOST-­‐PATHOGEN   INTERACTIONS  

BAULCOMBE  David  –  SESSION  2,  Monday  12,  SALON  DIABLERETS  II,  16:30-­‐18:30   DB_Paper28_GenomeRes2016  

EPFL  

  BOURGINE  Baptiste  

MOST  MICRORNAS  IN  THE  SINGLE-­‐CELL  ALGA  CHLAMYDOMONAS  REINHARDTII  ARE   PRODUCED  BY  DICER-­‐LIKE  3-­‐MEDIATED  CLEAVAGE  OF  INTRONS  AND  UNTRANSLATED   REGIONS  OF  CODING  RNAS  

University  of  Lausanne  

DB_Paper29_ProcNatlAcadSciUSA2016  

HOFMANN  Manuel  

MOBILE  SMALL  RNAS  REGULATE  GENOME-­‐WIDE  DNA  METHYLATION  

University  of  Geneva  

DB_Paper30_JExpBot2016  

STEENSMA  Priscille  

SLTAB2  IS  THE  PARAMUTATED  SULFUREA  LOCUS  IN  TOMATO  

          GREGORY  Brian  –  SESSION  3,  Tuesday  13,  SALON  DIABLERETS  I,  17:00-­‐19:00   BG_Paper10_Science2016  

University  of  Geneva  

 

  ELEJALDE  Carolina  

SYNTHETIC  EVOLUTIONARY  ORIGIN  OF  A  PROOFREADING  REVERSE  TRANSCRIPTASE  

University  of  Lausanne  

BG_Paper11_MolCell2015  

PESQUERA  Marta  

GLOBAL  ANALYSIS  OF  THE  RNA-­‐PROTEIN  INTERACTION  AND  RNA  SECONDARY   STRUCTURE  LANDSCAPES  OF  THE  ARABIDOPSIS  NUCLEUS  

University  of  Geneva  

BG_Paper12_Cell2015   WIDESPREAD  CO-­‐TRANSLATIONAL  RNA  DECAY  REVEALS  RIBOSOME  DYNAMICS   WU  Chung-­‐I  –  SESSION  4,  Tuesday  13,  SALON  DIABLERETS  II,  17:00-­‐19:00  

GARSCHALL  Kathrin   University  of  Lausanne  

 

CW_Paper4_PlosBiol2011  

MANGE  François  

COUPLED  EVOLUTION  OF  TRANSCRIPTION  AND  MRNA  DEGRADATION  

University  of  Lausanne  

CW_Paper5_Nature2011  

ARONGAUS  Adriana  

GLOBAL  QUANTIFICATION  OF  MAMMALIAN  GENE  EXPRESSION  CONTROL  

University  of  Geneva  

CW_Paper6_GenomeRes2009   EVOLUTION  UNDER  CANALIZATION  AND  THE  DUAL  ROLES  OF  MICRORNAS-­‐A   HYPOTHESIS   CHEN  Lingling  –  SESSION  5,  Tuesday  13,  WORKROOM  N°17,  17:00-­‐19:00  

BIASINI  Adriano   University  of  Lausanne  

 

LC_Paper19_Nature2013  

MORADI  Aboubakr  

CIRCULAR  RNAS  ARE  A  LARGE  CLASS  OF  ANIMAL  RNAS  WITH  REGULATORY  POTENCY  

University  of  Fribourg  

LC_Paper20_MolCell2013  

ARYAL  Bibek  

CIRCULAR  INTRONIC  LONG  NONCODING  RNAS  

University  of  Fribourg  

LC_Paper21_Cell2014   COMPLEMENTARY  SEQUENCE-­‐MEDIATED  EXON  CIRCULARIZATION   JENSEN  Torben  –  SESSION  6,  Tuesday  13,  WORKROOM  N°18,  17:00-­‐19:00  

GRUHL  Franziska   University  of  Lausanne  

 

TJ_Paper25_NatStructMolBiol2013  

VACHEY  Gabriel  

THE  HUMAN  CAP-­‐BINDING  COMPLEX  IS  FUNCTIONALLY  CONNECTED  TO  THE  NUCLEAR   RNA  EXOSOME  

University  of  Lausanne  

TJ_Paper26_MolCell2011  

DANZA  Francesco  

INTERACTING  PROFILING  IDENTIFIES  THE  HUMAN  NUCLEAR  EXOSOME  TARGETING   COMPLEX  

University  of  Geneva  

TJ_Paper27_CellRep2015  

HSIEH  Yi-­‐Fang  

THE  NUCLEAR  POLYA-­‐BINDING  PROTEIN  NAB2P  IS  ESSENTIAL  FOR  MRNA  PRODUCTION  

       

University  of  Lausanne  

       

    DEAN  Caroline  –  SESSION  7,  Wednesday  14,  SALON  DIABLERETS  I,  10:30-­‐12:30   CD_Paper1_ELife2015  

      SKVORTSOVA  Mariya  

LOCAL  CHROMATINE  ENVIRONNEMENT  OF  A  POLYCOMB  TARGET  GENE  INSTRUCTS  ITS   OWN  EPIGENETIC  INHERITANCE  

University  of  Geneva    

CD_Paper2_GenesDev2015  

SELA  Ayala  

PHENOTYPIC  EVOLUTION  THROUGH  VARIATION  SPLICING  OF  THE  NONCODING  RNA   COOLAIR  

University  of  Geneva    

CD_Paper3_Science2013   R-­‐LOOP  STABILIZATION  REPRESSES  ANTISENSE  TRANSCRIPTION  AT  THE  ARABIDOPSIS   FLC  LOCUS   RINN  John  –  SESSION  8,  Wednesday  14,  SALON  DIABLERETS  II,  10:30-­‐12:30  

FUDGE  Jared   University  of  Geneva  

 

JR_Paper16_NatStructMolBiol2014  

JIALIN  Liu  

TOPOLOGICAL  ORGANIZATION  OF  MULTICHROMOSOMAL  REGIONS  BY  THE  LONG   INTERGENIC  NONCODING  RNA  FIRRE  

University  of  Lausanne  

JR_Paper17_NatCommun2016  

YAN  Zheng  

FUNCTION  AND  EVOLUTION  OF  LOCAL  REPEATS  IN  THE  FIRRE  LOCUS  

University  of  Lausanne  

JR_Paper18_NatMethods2015  

YARAHMADOV  Tural  

MULTIPLEXABLE,  LOCUS-­‐SPECIFIC  TARGETING  OF  LONG  RNAS  WITH  CRISPR-­‐DISPLAY   PILLAI  Ramesh  –  SESSION  9,  Wednesday  14,  WORKROOM  N°17,  10:30-­‐12:30  

University  of  Bern  

 

RP_Paper22_Science2007  

KRAFT  Matthias  

DEVELOPMENTALLY  REGULATED  PIRNA  CLUSTERS  IMPLICATE  MILI  IN  TRANSPOSON   CONTROL  

University  of  Bern  

RP_Paper23_Cell2007   DISCRETE  SMALL  RNA-­‐GENERATING  LOCI  AS  MASTER  REGULATORS  OF  TRANSPOSON   ACTIVITY  IN  DROSOPHILA   ULITSKY  Igor  –  SESSION  9,  Wednesday  14,  WORKROOM  N°18,  10:30-­‐12:30  

IU_Paper13_MolCell2009   AN  ARCHITECTURAL  ROLE  FOR  A  NULEAR  NONCODING  RNA  :  NEAT1  RNA  IS  ESSENTIAL   FOR  THE  STRUCTURE  OF  PARASPECKLES  

IU_Paper15_CellStemCell2015   OPPOSING  ROLES  FOR  THE  INCRNA  HAUNT  AND  ITS  GENOMIC  LOCUS  IN  REGULATING   HOXA  GENE  ACTIVATION  DURING  EMBRYONIC  STEM  CELL  DIFFERENTIATION  

 

                                                           

SIQUEIRA  REIS  Rodrigo   University  of  Lausanne    

KHAN  Ghazanfar   University  of  Lausanne  

FERREIRA  DA  SILVA  Maria   University  of  Lausanne  

 

VILLARS  SYMPOSIUM  2016  

Non-­coding  RNAs  :  from  function  to  evolution   12-­‐14  September  2016  –  Eurotel  Victoria,  Villars-­‐sur-­‐Ollon       QUICK  TALKS  SESSION   20:30-­‐21:30,  Monday  12,  Conference  Room  

     

TITLE    

 

 

 

 

PRESENTED  BY  

     

  COSTA  NEVES  FERREIRA  DA   SILVA  Maria  

Linc-­MoP  is  a  modulator  of  embryonic  stem  cell  state  

CUSO  StarOmics  PhD  Student   University  of  Lausanne    

  YAN  Zheng  

  An  alternative  class  of  targets  for  microRNAs  containing  CG   dinucleotide  

CUSO  Ecology  &  Evolution  PhD   Student   University  of  Lausanne    

   

  KRESOJA  Jelena  

  Mechanism  regulating  the  expression  of  mesothelioma  biomarker   calretinin  

PhD  Student   University  of  Zurich    

 

  VACHEY  Gabriel  

   

Genome  editing  for  Huntington's  disease    

 

                                                   

CUSO  StarOmics  PhD  Student   University  of  Lausanne  

VILLARS  SYMPOSIUM  2016   Non-­coding  RNAs  :  from  function  to  evolution   12-­‐14  September  2016  –  Eurotel  Victoria,  Villars-­‐sur-­‐Ollon               ATTENDANCE  LIST           CUSO  Participants   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26           27   28   29   30   31   32   33   34   35      

  NAME  &  SURNAME   AGUILAR  BULTET    Lisandra   ARONGAUS  Adriana  Beatriz   ARYAL  Bibek   BIASINI  Adriano   BOURGINE  Baptiste   COSTA  NEVES  FERR.  DA  SILVA  Maria   DANZA  Francesco   ELEJALDE  Carolina   FUDGE  Jared   GARSCHALL  Kathrin   GRUHL  Franziska   HOFMANN  Manue   HSIEH  Yi-­‐Fang    KRAFT  Matthias   LIU  Jialin   MANGE  François   MORADI  Aboubakr   MUMBAUER  Simone   PESQUERA  ALONSO  Marta   SELA  Ayala   SHIM  Hyunjin   SKVORTSOVA  Mariya   STEENSMA  Priscille   VACHEY  Gabriel   YAN  Zheng   YARAHMADOV  Tural      

External  Participants    

NAME  &  SURNAME   BEZLER  Alexandra,  Dr.   CIAUDO  Constance,  Prof.   DEFORGES  Jules,  Dr.   FLOREZ  RUEDA  Ana  Marcela,  Dr.   KHAN  Ghazanfar,  Dr.   KRESOJA  Jeleda,  PhD  student   SIQUEIRA  REIS  Rodrigo,  Dr.   STUDER  Tania,  PhD  student   THAPAR  Roopa,  Prof.      

UNIVERSITY   UNIBE   UNIGE   UNIFR   UNIL   UNIL   UNIL   UNIGE   UNIL   UNIGE   UNIL   UNIL   UNIGE   UNIL   UNIBE   UNIL   UNIL   UNIFR   UNIL   UNIGE   UNIGE   EPFL   UNIGE   UNIGE   UNIL   UNIL   UNIBE        

EMAIL  ADDRESS   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   Yi-­‐[email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]        

Institution   University  of  Lausanne   ETHZ   University  of  Lausanne   University  of  Zurich   University  of  Lausanne   University  of  Zurich   University  of  Lausanne   Heideleberg  University   Texas  University      

EMAIL  ADDRESS   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]­‐heideleberg.de   [email protected]      

   

 

  36   37   38   39        

NAME  &  SURNAME   MARQUES  Ana,  Prof.   POIRIER  Yves,  Prof.   SCHWANDER  Tanja,  Prof.   ZOIA  Debora,  CUSO  Coordinator      

Organizers    

Invited  Speakers  

    NAME  &  SURNAME   40   BAULCOMBE  David   41   CHEN  Lingling   42   DEAN  Caroline   43   EULALIO  Ana   44   GREGORY  Brian   45   46   47   48  

JENSEN  Torben   PILLAI  Ramesh   RINN  John   ULITSY  Igor  

49   WU  Chung-­‐I  

               

   

   

Institution   University  of  Lausanne   University  of  Lausanne   University  of  Lausanne   University  of  Lausanne        

EMAIL  ADDRESS   [email protected]   [email protected]   [email protected]   [email protected]        

Institution   University  of  Cambridge   Shanghai  Institute  for   Biological  Sciences   John  innes  Centre   University  of  Würzburg   University  of   Pennsylvania   Aarhus  University   University  of  Geneva   University  of  Harvard   Weizmann  Institute  of   Science   University  of  Chicago  

EMAIL  ADDRESS   [email protected]   [email protected]   [email protected]   ana.eulalio@uni-­‐wuerzburg.de   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]   [email protected]  

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